Running python scripts inside virtual environments using conda, also included is an example for running jupyterlab with an SSH tunnel.

Setup miniconda

  • Open a new SSH session and run
module load miniconda
conda init bash
  • After restart terminal, you can see:
(base) [user@granado ~]$

The default conda env is called (base), to list all available envs run: conda env list

Create a new environment and install dependencies

  • Load miniconda and run:
 conda create --name my_env

This new env will be only available for your account

  • Install dependencies inside the env:
conda install -n my_env numpy

Run jupyterlab

  • Open a new SSH session as follows:
ssh -L 8082:127.0.0.1:8082 user@201.150.98.56
  • Load miniconda
module load miniconda
  • Activate wrfda env
conda activate wrfda
  • Start jupyterlab server
jupyter-lab --port 8882