Run Python scripts with conda on UN-HPC

Running python scripts inside virtual environments using conda, also included is an example for running jupyterlab with an SSH tunnel.

Setup miniconda

• Open a new SSH session and run

module load miniconda
conda init bash

• After restart terminal, you can see:

(base) [user@granado ~]$

The default conda env is called (base), to list all available envs run: conda env list

Create a new environment and install dependencies

• Load miniconda and run:

 conda create --name my_env

This new env will be only available for your account - Install dependencies inside the env:

conda install -n my_env numpy 

Run jupyterlab

• Open a new SSH session as follows:

ssh -L 8082:127.0.0.1:8082 user@201.150.98.56

• Load miniconda

module load miniconda

• Activate wrfda env

conda activate wrfda

• Start jupyterlab server

jupyter-lab --port 8882